Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3619Sulfonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (255 aa)    
Predicted Functional Partners:
SPO3618
Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.
 
 0.981
SPO3620
Sulfonate ABC transporter, periplasmic sulfonate-binding protein.
 
 
 0.978
SPO1787
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.792
tauC
Taurine ABC transporter, permease protein; Identified by similarity to SP:Q47539; PMID: 16541231.
 
 0.754
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.746
SPO0053
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.719
SPO1546
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; Identified by similarity to SP:P24136; match to protein family HMM PF00005.
 
    
0.718
SPO3777
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P76027; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.686
SPO1786
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.677
SPO0050
ABC transporter, periplasmic substrate-binding protein; Assignment based partly on membership in ABC transporter gene cluster.
 
 
 0.656
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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