Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3620Sulfonate ABC transporter, periplasmic sulfonate-binding protein. (338 aa)    
Predicted Functional Partners:
SPO3618
Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.
 
 
 0.980
SPO3619
Sulfonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.978
tauC
Taurine ABC transporter, permease protein; Identified by similarity to SP:Q47539; PMID: 16541231.
 
 
 0.641
SPO3617
Peptidoglycan-binding protein, putative; Identified by match to protein family HMM PF01471.
       0.639
SPO0053
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.624
SPO0052
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.619
tauB
Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
  
 
 0.619
SPO1785
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.619
SPO1787
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.606
SPO3621
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.577
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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