Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3622Hypothetical protein; Identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863. (246 aa)    
Predicted Functional Partners:
SPO3623
Hypothetical protein; Identified by similarity to GB:CAE25504.1.
       0.695
SPO3621
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.678
hsdS
Type I restriction-modification system, S subunit; Identified by similarity to SP:P05719; match to protein family HMM PF01420.
 
    0.559
hsdR
Type I restriction-modification system, R subunit; Identified by match to protein family HMM PF04313; match to protein family HMM TIGR00348.
 
   
 0.517
SPO3618
Sulfonate ABC transporter, permease protein, putative; Identified by similarity to SP:P75851; similarity to SP:Q47539; match to protein family HMM PF00528.
       0.510
SPO3619
Sulfonate ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.510
SPO3620
Sulfonate ABC transporter, periplasmic sulfonate-binding protein.
       0.510
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
 
     0.495
SPO3617
Peptidoglycan-binding protein, putative; Identified by match to protein family HMM PF01471.
       0.438
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.