Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3623Hypothetical protein; Identified by similarity to GB:CAE25504.1. (108 aa)    
Predicted Functional Partners:
SPO3622
Hypothetical protein; Identified by similarity to GB:BAC46174.1; match to protein family HMM PF01863.
       0.695
SPO2850
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.642
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
 
    0.623
SPO2330
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.594
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.586
SPO1267
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.551
SPO2145
Hypothetical protein; Identified by similarity to PIR:T46851.
  
    0.509
SPO3621
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
       0.496
SPO0934
Membrane protein, putative.
  
     0.488
SPO3151
HAD-superfamily subfamily IIA hydrolase, TIGR01459; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460.
  
     0.475
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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