STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3627Hypothetical protein; Identified by Glimmer2; putative. (175 aa)    
Predicted Functional Partners:
SPO3629
Hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.861
SPO3628
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.858
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
  
 0.847
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
 
     0.817
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
    0.761
SPO1240
Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.
 
 
 0.754
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.741
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.723
SPO2775
Hypothetical protein; Identified by similarity to SP:P29909.
  
     0.716
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
  
     0.715
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.