STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3631OmpA domain protein; Identified by match to protein family HMM PF00691. (637 aa)    
Predicted Functional Partners:
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
 
     0.898
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.855
SPO3627
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.814
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.713
SPO1180
Hypothetical protein; Identified by similarity to GB:BAB48908.1.
  
     0.699
SPO3852
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.698
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.695
SPO0727
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.675
SPO1376
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF05157.
  
   
 0.658
SPO1356a
Signal transduction; 'Novel gene detected by proteogenomics, SPO_PG019; identified in over 20 other Roseobacter strains'.
 
     0.656
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.