STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3632Hypothetical protein; Identified by similarity to GB:BAC45762.1. (103 aa)    
Predicted Functional Partners:
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
     0.898
SPO3627
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.788
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.774
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.767
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
  
     0.767
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.766
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.762
SPO0393
Identified by match to protein family HMM PF01694.
  
     0.760
SPO0304
Lipoprotein, putative.
  
     0.758
SPO0951
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.758
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.