STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3638Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106. (259 aa)    
Predicted Functional Partners:
SPO3639
K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.
  
  
 0.752
SPO3640
Peptidase, family S49; Identified by match to protein family HMM PF01343.
  
    0.672
uvrC
UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.652
bdh-2
D-beta-hydroxybutyrate dehydrogenase; Identified by similarity to SP:O86034; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.556
SPO2842
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.556
SPO1480
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
 
 0.522
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 
 0.492
SPO2413
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.452
SPO3440
20-beta-hydroxysteroid dehydrogenase, putative; Identified by similarity to SP:P19992; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.449
SPO3369
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
  
     0.446
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.