STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3641ABC transporter, permease protein; Identified by similarity to SP:P36880. (253 aa)    
Predicted Functional Partners:
SPO3642
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.972
SPO3847
ABC transporter, ATP-binding protein; Identified by similarity to GB:CAD16663.1; match to protein family HMM PF00005.
  
 0.839
SPO3640
Peptidase, family S49; Identified by match to protein family HMM PF01343.
       0.615
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
  
 
 0.594
SPO3901
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
       0.570
SPO0957
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
  
 
0.447
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
  
 0.425
SPO1511
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 0.413
SPO3643
Integral membrane protein; Identified by similarity to GB:CAE33392.1; match to protein family HMM PF00892.
       0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.