Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
SPO3642ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (309 aa)    
Predicted Functional Partners:
SPO3641
ABC transporter, permease protein; Identified by similarity to SP:P36880.
  
 0.972
SPO0957
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
 0.862
SPO3640
Peptidase, family S49; Identified by match to protein family HMM PF01343.
  
    0.601
SPO3901
Carbon monoxide dehydrogenase G protein, putative; Identified by similarity to GB:CAB76249.1; match to protein family HMM PF06240.
       0.570
SPO1521
Regulatory protein, putative; Identified by similarity to SP:Q00790.
  
  
 0.550
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.474
SPO3639
K+-dependent Na+/Ca+ exchanger related-protein; Identified by match to protein family HMM PF01699; match to protein family HMM TIGR00367.
  
 
 0.466
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.435
SPO1510
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
  
 0.433
SPO3643
Integral membrane protein; Identified by similarity to GB:CAE33392.1; match to protein family HMM PF00892.
   
   0.432
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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