STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3651Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487. (314 aa)    
Predicted Functional Partners:
SPO3652
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO3650
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00211.
       0.584
SPO1494
2-hydroxychromene-2-carboxylate isomerase, putative; This may represent a duplication of NahD in which the N-terminus copy has diverged more from NahD than the C-terminus copy; identified by match to protein family HMM PF01323.
  
     0.558
SPO2906
Hypothetical protein; Identified by similarity to GB:CAE26026.1.
  
     0.466
SPO1130
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
    0.426
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
    0.426
SPO1996
Hypothetical protein; Identified by similarity to GB:CAE79871.1.
  
     0.422
SPO1688
Thioesterase family protein; Identified by similarity to GB:AAN29721.1; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
    0.417
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.