Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3657Hydrolase, haloacid delahogenase-like family; Identified by match to protein family HMM PF00702. (242 aa)    
Predicted Functional Partners:
clpS
ATP-dependent Clp protease, adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.694
SPO3655
Methyltransferase, putative; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily.
 
     0.679
SPO3658
Identified by match to protein family HMM PF00768; Belongs to the peptidase S11 family.
       0.595
SPO3654
7-alpha-hydroxysteroid dehydrogenase, putative; Identified by similarity to SP:P25529; match to protein family HMM PF00106.
  
 
  0.469
SPO3053
NUDIX domain protein; Identified by match to protein family HMM PF00293.
 
 
 0.468
hemF
Coproporphyrinogen III oxidase, aerobic; Identified by match to protein family HMM PF01218.
  
    0.452
SPO0968
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293.
 
 
 0.451
SPO0023
Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293; Belongs to the Nudix hydrolase family.
 
 
 0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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