Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3661Identified by match to protein family HMM PF02682. (249 aa)    
Predicted Functional Partners:
SPO3660
Urea amidolyase-like protein.
 
 0.999
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.993
SPO1111
Hypothetical protein; Identified by similarity to GB:CAE33489.1; match to protein family HMM PF07286; Belongs to the D-glutamate cyclase family.
 
    0.902
SPO3662
Membrane protein, putative.
       0.780
SPO3664
Hypothetical protein.
       0.717
SPO0768
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
    0.705
SPO1961
Transcriptional regulator, IclR family; Identified by match to protein family HMM PF01614.
  
    0.705
iseR
Isethionate dissimilation regulator; Identified by match to protein family HMM PF01614; PMID: 19933343.
  
    0.705
SPO3663
TRAP dicarboxylate family transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
       0.696
SPO3665
Bacterial extracellular solute-binding protein, family 7; Identified by match to protein family HMM PF03480.
       0.513
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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