STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3681Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355. (380 aa)    
Predicted Functional Partners:
SPO3680
Identified by match to protein family HMM PF01042.
 
    0.903
SPO3679
Hypothetical protein; Identified by similarity to PIR:C82973; match to protein family HMM PF06267.
 
     0.900
SPO1450
Aromatic 1,2-dioxygenase, beta subunit; Identified by match to protein family HMM PF00866.
 
 
 0.892
SPO3677
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.783
SPO3678
Rieske 2Fe-2S domain protein; Identified by match to protein family HMM PF00355.
 
    
0.760
SPO3682
Hypothetical protein; Identified by similarity to GB:CAE35157.1.
 
     0.734
argE-2
Acetylornithine deacetylase; Identified by similarity to SP:O68873; match to protein family HMM PF01546; match to protein family HMM TIGR01892.
 
     0.633
paaK
Phenylacetic acid degradation oxidoreductase PaaK; Identified by similarity to SP:P76081; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; match to protein family HMM TIGR02160.
  
  
 0.627
SPO2346
Sarcosine oxidase, delta subunit family; Identified by similarity to SP:Q46336; match to protein family HMM PF04267.
  
    0.559
SPO2344
Sarcosine oxidase, gamma subunit family; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
  
  
 0.482
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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