STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3686Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family. (256 aa)    
Predicted Functional Partners:
gabD-2
Succinate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.
  
 
 0.912
SPO2430
Hydrolase, UxaA family; Identified by match to protein family HMM PF04292; match to protein family HMM PF04295.
  
 0.736
SPO3688
Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903.
 
   
 0.724
SPO3687
Decarboxylase, pyridoxal-dependent; Identified by match to protein family HMM PF00282.
       0.613
SPO3689
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
   
 0.518
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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