STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3689Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047. (162 aa)    
Predicted Functional Partners:
SPO3688
Extradiol ring-cleavage dioxygenase family protein; Identified by match to protein family HMM PF00903.
 
   
 0.796
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.579
SPO0769
Identified by match to protein family HMM PF03401.
  
    0.563
SPO3686
Identified by match to protein family HMM PF03328; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.518
SPO3687
Decarboxylase, pyridoxal-dependent; Identified by match to protein family HMM PF00282.
       0.508
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.