STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtdA-1Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1. (344 aa)    
Predicted Functional Partners:
SPO3692
Monooxygenase, putative; Identified by match to protein family HMM PF01360.
 
  
 0.952
SPO3691
Identified by match to protein family HMM PF01557.
 
   
 0.868
SPO3693
TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
     0.711
fcs
feruloyl-CoA synthetase; Identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501.
 
     0.600
SPO3700
Identified by match to protein family HMM PF00378.
 
     0.569
SPO3695
TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
 
     0.551
SPO3694
Hypothetical protein; Identified by similarity to GB:AAK03610.1.
 
     0.546
boxB
benzoyl-CoA oxygenase, B subunit; Identified by similarity to GB:AAN39376.1.
 
     0.541
aroK-2
DNA-binding/shikimate kinase domain protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
     0.517
SPO3698
Hydrolase, putative; Identified by similarity to GB:BAC55927.1.
 
     0.495
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.