close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3692Monooxygenase, putative; Identified by match to protein family HMM PF01360. (395 aa)    
Predicted Functional Partners:
gtdA-1
Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1.
 
  
 0.952
SPO3691
Identified by match to protein family HMM PF01557.
  
  
 0.799
SPO3693
TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
       0.648
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
   
    0.598
SPO3695
TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
   
   0.517
fcs
feruloyl-CoA synthetase; Identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501.
 
  
 0.492
SPO3694
Hypothetical protein; Identified by similarity to GB:AAK03610.1.
  
    0.482
SPO0849
Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.
  
 
 0.476
SPO1452
Oxidoreductase NAD-binding domain/2Fe-2S iron-sulfur cluster binding domain protein; Identified by match to protein family HMM PF00111; match to protein family HMM PF00175.
 
   
 0.458
badA-1
Benzoate-coenzyme A ligase; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501.
 
  
 0.456
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.