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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3694Hypothetical protein; Identified by similarity to GB:AAK03610.1. (194 aa)    
Predicted Functional Partners:
SPO3695
TRAP dicarboxylate transporter, DctM subunit, putative; Identified by match to protein family HMM PF06808.
 
 
 0.960
SPO3693
TRAP dicarboxylate transporter, DctP subunit; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
  
 0.919
fcs
feruloyl-CoA synthetase; Identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501.
 
     0.708
gtdA-1
Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1.
 
     0.546
SPO3691
Identified by match to protein family HMM PF01557.
       0.494
SPO3692
Monooxygenase, putative; Identified by match to protein family HMM PF01360.
  
    0.482
SPO2332
Transporter, AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
     0.446
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.