Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
boxBbenzoyl-CoA oxygenase, B subunit; Identified by similarity to GB:AAN39376.1. (483 aa)    
Predicted Functional Partners:
SPO3700
Identified by match to protein family HMM PF00378.
 
 
 0.992
boxA
benzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175.
 
  
 0.990
aroK-2
DNA-binding/shikimate kinase domain protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.873
badA-1
Benzoate-coenzyme A ligase; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501.
 
   
 0.855
SPO3698
Hydrolase, putative; Identified by similarity to GB:BAC55927.1.
 
    0.854
fcs
feruloyl-CoA synthetase; Identified by similarity to GB:CAB60226.1; match to protein family HMM PF00501.
 
   
 0.741
paaH
Phenylacetic acid degradation protein PaaH; Identified by similarity to SP:P76078; match to protein family HMM PF06243; match to protein family HMM TIGR02157.
  
 
 0.637
SPO3702
Hypothetical protein; Identified by Glimmer2; putative.
       0.601
gtdA-1
Gentisate 1,2-dioxygenase; Identified by similarity to GB:CAA12267.1.
 
     0.541
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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