STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
boxAbenzoyl-CoA oxygenase, A subunit; Identified by similarity to GB:AAN39377.1; match to protein family HMM PF00037; match to protein family HMM PF00175. (372 aa)    
Predicted Functional Partners:
boxB
benzoyl-CoA oxygenase, B subunit; Identified by similarity to GB:AAN39376.1.
 
  
 0.990
SPO3700
Identified by match to protein family HMM PF00378.
 
 
 0.989
sat
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
  
  
 0.972
SPO2634
Sulfite reductase, putative; Identified by match to protein family HMM PF01077; match to protein family HMM PF03460.
  
 
 0.952
SPO2864
CobG; Identified by similarity to SP:P21637; match to protein family HMM PF03460; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.933
aroK-2
DNA-binding/shikimate kinase domain protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.916
SPO3698
Hydrolase, putative; Identified by similarity to GB:BAC55927.1.
 
  
 0.841
cysH
Phosophoadenylyl-sulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
  
  
 0.826
badA-1
Benzoate-coenzyme A ligase; Identified by similarity to GB:AAA92151.1; match to protein family HMM PF00501.
 
  
 0.826
SPO0568
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein.
  
 
 0.774
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.