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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3710Hypothetical protein; Identified by similarity to GB:BAC53043.1. (381 aa)    
Predicted Functional Partners:
SPO0901
Adenylate/guanylate cyclase; Identified by match to protein family HMM PF00111; match to protein family HMM PF00211.
  
     0.669
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
  
     0.663
SPO0574
ABC transporter, transmembrane ATP-binding protein, putative.
  
     0.650
SPO0560
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by similarity to GB:BAB50197.1.
  
     0.635
SPO0557
Mechanosensitive ion channel family protein.
  
     0.623
SPO0562
Hypothetical protein; Identified by similarity to GB:BAB50200.1.
  
     0.589
SPO0551
Hypothetical protein; Identified by similarity to PIR:B97670.
  
     0.566
SPO0688
Adenylate/guanylate cyclase.
  
     0.564
SPO0549
Hypothetical protein; Identified by similarity to PIR:G97668.
  
     0.544
SPO3711
Membrane protein, putative.
       0.532
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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