STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
SPO3715Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (216 aa)    
Predicted Functional Partners:
SPO1946
Identified by match to protein family HMM PF00132.
   
 
 0.837
SPO0466
Transporter, formate/nitrate family; Identified by similarity to SP:P21501.
  
  
 0.830
SPO3058
Identified by match to protein family HMM PF00916; match to protein family HMM PF01740.
 
  
 0.823
SPO3716
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.725
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.708
SPO3714
Hypothetical protein; Identified by Glimmer2; putative.
       0.637
SPO0665
SlyX protein, putative; Identified by similarity to SP:Q89SJ8.
  
     0.612
SPO3717
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
       0.533
SPO3718
Identified by match to protein family HMM PF00877.
       0.531
sulP
Sulfate permease; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
 
  
 0.510
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.