STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3716Hypothetical protein; Identified by Glimmer2; putative. (127 aa)    
Predicted Functional Partners:
SPO3715
Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
     0.765
SPO3717
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
       0.739
SPO3718
Identified by match to protein family HMM PF00877.
       0.739
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.667
SPO0021
Hpt domain protein; Identified by match to protein family HMM PF01627.
  
     0.666
SPO0931
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.588
SPO2581
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.587
SPO3460
Hypothetical protein; Identified by similarity to PIR:E98268.
  
     0.586
SPO2942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.551
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.508
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.