STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3718Identified by match to protein family HMM PF00877. (249 aa)    
Predicted Functional Partners:
SPO3717
Identified by match to protein family HMM PF00883; Belongs to the peptidase M17 family.
     
 0.839
SPO3716
Hypothetical protein; Identified by Glimmer2; putative.
       0.696
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
   
 0.643
SPO3807
Hypothetical protein; Identified by similarity to GB:BAC45729.1.
  
     0.638
SPO3812
Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.
    
 
 0.632
tyrB
Aromatic amino acid aminotransferase; Identified by similarity to SP:P95468; match to protein family HMM PF00155.
       0.609
SPO3719
Thiosulfate sulfurtransferase, putative; Identified by similarity to PIR:T52663; match to protein family HMM PF00581.
       0.608
SPO0338
Cell division permease protein FtsX, putative; Identified by match to protein family HMM PF02687.
   
 
 0.559
SPO3715
Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
       0.531
SPO3863
HD domain protein; Identified by match to protein family HMM PF01966.
 
     0.518
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.