SPO3727 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO3727

VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333. (268 aa)

Predicted Functional Partners:

SPO3726

0.986

SPO1007

0.871

SPO2671

0.825

SPO2672

0.781

SPO3729

0.556

lptD

0.549

SPO3728

0.541

SPO1098

0.536

SPO2289

0.536

SPO2290

0.536

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1007	SPO2671	SPO1007	SPO2671	Identified by match to protein family HMM PF02470.	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	0.996
SPO1007	SPO2672	SPO1007	SPO2672	Identified by match to protein family HMM PF02470.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.995
SPO1007	SPO3726	SPO1007	SPO3726	Identified by match to protein family HMM PF02470.	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	0.996
SPO1007	SPO3727	SPO1007	SPO3727	Identified by match to protein family HMM PF02470.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.871
SPO1098	SPO3727	SPO1098	SPO3727	Hypothetical protein; Identified by similarity to GB:AAM43280.1.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.536
SPO2289	SPO2290	SPO2289	SPO2290	Hypothetical protein; Identified by similarity to PIR:E82389.	Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.	0.494
SPO2289	SPO3727	SPO2289	SPO3727	Hypothetical protein; Identified by similarity to PIR:E82389.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.536
SPO2290	SPO2289	SPO2290	SPO2289	Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.	Hypothetical protein; Identified by similarity to PIR:E82389.	0.494
SPO2290	SPO3727	SPO2290	SPO3727	Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG028; identified in over 20 other Roseobacter strains'.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.536
SPO2671	SPO1007	SPO2671	SPO1007	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	Identified by match to protein family HMM PF02470.	0.996
SPO2671	SPO2672	SPO2671	SPO2672	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.999
SPO2671	SPO3726	SPO2671	SPO3726	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	0.972
SPO2671	SPO3727	SPO2671	SPO3727	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.825
SPO2672	SPO1007	SPO2672	SPO1007	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF02470.	0.995
SPO2672	SPO2671	SPO2672	SPO2671	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	0.999
SPO2672	SPO3726	SPO2672	SPO3726	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	0.976
SPO2672	SPO3727	SPO2672	SPO3727	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.	0.781
SPO3726	SPO1007	SPO3726	SPO1007	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	Identified by match to protein family HMM PF02470.	0.996
SPO3726	SPO2671	SPO3726	SPO2671	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	Membrane protein; Identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056.	0.972
SPO3726	SPO2672	SPO3726	SPO2672	Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.976

page 1 of 3

Server load: medium (50%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2026

Credits

Access

Info

About