SPO3729 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO3729

Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843. (433 aa)

Predicted Functional Partners:

SPO1496

0.975

SPO3728

0.963

SPO1240

0.959

lolD

0.805

SPO1495

0.805

SPO2181

0.805

SPO1995

0.803

SPO3673

0.738

SPO1617

0.724

SPO2352

0.724

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO1240	SPO1495	SPO1240	SPO1495	Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.469
SPO1240	SPO1496	SPO1240	SPO1496	Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.820
SPO1240	SPO3729	SPO1240	SPO3729	Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.959
SPO1495	SPO1240	SPO1495	SPO1240	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.	0.469
SPO1495	SPO1496	SPO1495	SPO1496	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.998
SPO1495	SPO3729	SPO1495	SPO3729	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.805
SPO1496	SPO1240	SPO1496	SPO1240	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Type I secretion outer membrane protein, TolC family; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01844.	0.820
SPO1496	SPO1495	SPO1496	SPO1495	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.998
SPO1496	SPO2181	SPO1496	SPO2181	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.978
SPO1496	SPO3729	SPO1496	SPO3729	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.975
SPO1496	lolD	SPO1496	SPO1124	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.	0.978
SPO1617	SPO1995	SPO1617	SPO1995	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.639
SPO1617	SPO3728	SPO1617	SPO3728	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.	0.706
SPO1617	SPO3729	SPO1617	SPO3729	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.724
SPO1995	SPO1617	SPO1995	SPO1617	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	0.639
SPO1995	SPO2352	SPO1995	SPO2352	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Type I secretion target repeat protein; Identified by similarity to SP:P55127; match to protein family HMM PF00353.	0.627
SPO1995	SPO3673	SPO1995	SPO3673	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Type I secretion target repeat protein; Identified by match to protein family HMM PF00353.	0.593
SPO1995	SPO3728	SPO1995	SPO3728	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.	0.503
SPO1995	SPO3729	SPO1995	SPO3729	ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.	0.803
SPO2181	SPO1496	SPO2181	SPO1496	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.978

page 1 of 3

Server load: medium (52%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About