Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SPO3731Glycerophosphoryl diester phosphodiesterase, putative; Identified by similarity to SP:P10908; match to protein family HMM PF03009. (252 aa)    
Predicted Functional Partners:
SPO3730
Identified by match to protein family HMM PF01042.
       0.790
phhB
4a-hydroxytetrahydrobiopterin dehydratase; Identified by similarity to SP:P80095; match to protein family HMM PF01329.
   
   0.674
SPO3732
Hypothetical protein; Identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339.
       0.659
SPO3728
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.
       0.590
SPO3729
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
     
 0.588
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
  
 0.584
glpD
Aerobic glycerol-3-phosphate dehydrogenase; Identified by similarity to SP:P13035; match to protein family HMM PF01266; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
 
 0.509
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
   
 0.468
apqZ
Aquaporin Z; Identified by similarity to SP:P48838; match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.456
SPO1487
Membrane protein, putative.
  
 
 0.456
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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