STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3732Hypothetical protein; Identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339. (395 aa)    
Predicted Functional Partners:
SPO3730
Identified by match to protein family HMM PF01042.
      0.900
phhB
4a-hydroxytetrahydrobiopterin dehydratase; Identified by similarity to SP:P80095; match to protein family HMM PF01329.
  
    0.850
SPO3731
Glycerophosphoryl diester phosphodiesterase, putative; Identified by similarity to SP:P10908; match to protein family HMM PF03009.
       0.659
ate
arginine-tRNA-protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
 
     0.611
SPO3728
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.
       0.545
SPO3729
Type I secretion membrane fusion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
       0.474
SPO3726
Identified by match to protein family HMM PF05494; match to protein family HMM TIGR01409.
       0.455
SPO3727
VacJ lipoprotein, putative; Identified by similarity to SP:P43262; match to protein family HMM PF04333.
       0.455
SPO2902
Identified by match to protein family HMM PF00043; match to protein family HMM PF02798.
  
     0.449
clpS
ATP-dependent Clp protease, adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
 
    0.448
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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