Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phhB4a-hydroxytetrahydrobiopterin dehydratase; Identified by similarity to SP:P80095; match to protein family HMM PF01329. (97 aa)    
Predicted Functional Partners:
SPO3732
Hypothetical protein; Identified by similarity to GB:CAC46070.1; match to protein family HMM PF04339.
  
    0.850
hppD
4-hydroxyphenylpyruvate dioxygenase; Identified by similarity to SP:P80064; match to protein family HMM PF00903; match to protein family HMM TIGR01263.
  
  
 0.816
SPO3730
Identified by match to protein family HMM PF01042.
  
    0.795
hmgA
Homogentisate 1,2-dioxygenase; Identified by similarity to SP:Q9X4F5.
 
  
 0.683
SPO3731
Glycerophosphoryl diester phosphodiesterase, putative; Identified by similarity to SP:P10908; match to protein family HMM PF03009.
   
   0.674
hmgB
Fumarylacetoacetase.
 
  
 0.592
SPO0026
Identified by match to protein family HMM PF01743; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
      0.580
tyrB
Aromatic amino acid aminotransferase; Identified by similarity to SP:P95468; match to protein family HMM PF00155.
  
  
 0.544
SPO3728
Type I secretion system ATPase; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR01842.
       0.539
hmgC
Maleylacetoacetate isomerase; Identified by similarity to SP:O43708.
 
  
 0.479
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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