Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3739Identified by match to protein family HMM PF01968; match to protein family HMM PF05378. (667 aa)    
Predicted Functional Partners:
SPO1473
Hydantoin utilization protein B, putative; Identified by similarity to SP:Q01263; match to protein family HMM PF02538.
 
 
 0.830
SPO1696
Identified by match to protein family HMM PF02538.
 
 
 0.819
SPO2134
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.685
SPO1602
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.597
SPO3737
Pyridine nucleotide-disulfide oxidoreductase family protein; Identified by match to protein family HMM PF00070.
       0.526
SPO3738
Methyltransferase, putative; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
       0.526
SPO2750
Identified by match to protein family HMM PF06253; Belongs to the trimethylamine methyltransferase family.
  
     0.435
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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