STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO3757Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (190 aa)    
Predicted Functional Partners:
SPO3758
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
      0.916
SPO3756
OmpA domain protein; Identified by match to protein family HMM PF00691.
       0.805
SPO3759
Molybdenum cofactor biosynthesis domain protein; Identified by match to protein family HMM PF00994.
       0.805
sfsA
Sugar fermentation stimulation protein A; Identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; Belongs to the SfsA family.
       0.615
SPO3350
Hypothetical protein; Identified by similarity to GB:BAB50844.1.
      0.614
SPO3289
phenylacetate-CoA ligase, putative; Identified by similarity to GB:AAF26285.1.
 
   
 0.594
SPO3296
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
  
     0.518
SPO1873
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to protein family HMM PF01558; match to protein family HMM PF02775.
 
    0.516
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.455
SPO3291
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster.
  
     0.426
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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