STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3758Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. (242 aa)    
Predicted Functional Partners:
SPO3757
Alkylhydroperoxidase AhpD family core domain protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
      0.917
SPO3756
OmpA domain protein; Identified by match to protein family HMM PF00691.
       0.813
SPO3759
Molybdenum cofactor biosynthesis domain protein; Identified by match to protein family HMM PF00994.
       0.813
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.750
SPO0373
Helicase, ATP-dependent, putative.
  
     0.721
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.708
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.702
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.701
SPO1032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.605
sfsA
Sugar fermentation stimulation protein A; Identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; Belongs to the SfsA family.
       0.588
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.