STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltDGlutamate synthase, small subunit; Identified by similarity to GB:AAG38999.1; match to protein family HMM PF00070; match to protein family HMM TIGR01318. (477 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.
 0.999
SPO0833
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
 
 
 0.984
SPO1555
Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.
 
 
 0.984
SPO1574
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
 
 
 0.975
SPO3272
Identified by match to protein family HMM PF01645; Belongs to the glutamate synthase family.
 
 
 0.975
SPO1777
Identified by match to protein family HMM PF00037; match to protein family HMM PF01180; match to protein family HMM TIGR01037.
 
 0.956
nuoF
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
 
 
 0.951
glnA
Glutamine synthetase, type I; Identified by similarity to SP:P06201; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653.
  
 
 0.922
tyrB
Aromatic amino acid aminotransferase; Identified by similarity to SP:P95468; match to protein family HMM PF00155.
 
  
 0.920
SPO1743
Glutamate dehydrogenase; Identified by similarity to SP:P96110; match to protein family HMM PF00208; match to protein family HMM PF02812; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.917
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.