SPO3778 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPO3778

Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (342 aa)

Predicted Functional Partners:

SPO3776

0.995

naaB-2

0.971

SPO1212

0.966

SPO3775

0.963

SPO1545

0.955

SPO0099

0.945

SPO2816

0.916

SPO2833

0.906

SPO3774

0.892

SPO1645

0.887

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0099	SPO3775	SPO0099	SPO3775	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.748
SPO0099	SPO3778	SPO0099	SPO3778	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.945
SPO1212	SPO3775	SPO1212	SPO3775	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.819
SPO1212	SPO3778	SPO1212	SPO3778	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.966
SPO1545	SPO3775	SPO1545	SPO3775	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.652
SPO1545	SPO3778	SPO1545	SPO3778	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.955
SPO1645	SPO3775	SPO1645	SPO3775	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.687
SPO1645	SPO3778	SPO1645	SPO3778	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.887
SPO2816	SPO3775	SPO2816	SPO3775	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.727
SPO2816	SPO3778	SPO2816	SPO3778	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.916
SPO2833	SPO3775	SPO2833	SPO3775	Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.815
SPO2833	SPO3778	SPO2833	SPO3778	Dipeptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.906
SPO3774	SPO3775	SPO3774	SPO3775	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	0.911
SPO3774	SPO3776	SPO3774	SPO3776	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.909
SPO3774	SPO3778	SPO3774	SPO3778	Oligopeptide/dipeptide ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P42065; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.892
SPO3775	SPO0099	SPO3775	SPO0099	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.748
SPO3775	SPO1212	SPO3775	SPO1212	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Oligopeptide ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	0.819
SPO3775	SPO1545	SPO3775	SPO1545	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/opine/nickel uptake family ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.652
SPO3775	SPO1645	SPO3775	SPO1645	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37315; match to protein family HMM PF00528.	0.687
SPO3775	SPO2816	SPO3775	SPO2816	Oligopeptide/dipeptide ABC transporter, permease protein; Identified by similarity to SP:P37316; match to protein family HMM PF00528.	Peptide/nickel/opine uptake family ABC transporter, permease protein; Identified by similarity to SP:P42063; match to protein family HMM PF00528.	0.727

page 1 of 2

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About