STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3787Assignment partly based on membership in sugar ABC transporter gene cluster; identified by match to protein family HMM TIGR01409. (549 aa)    
Predicted Functional Partners:
SPO3786
Sugar ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.994
SPO3785
Sugar ABC transporter, permease protein; Identified by similarity to PIR:T46751; match to protein family HMM PF00528.
 
 
 0.946
SPO3784
Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P02914; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.908
SPO3783
Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P10907; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.901
SPO1230
Hypothetical protein; Identified by similarity to PIR:T31014.
  
     0.737
acoR
Acetoin catabolism regulatory protein; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590.
 
    0.733
SPO3351
Aha1 domain protein; Identified by similarity to PIR:G96031; match to protein family HMM PF05146.
 
    0.714
acoX
Acetoin catabolism protein X; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
     0.647
SPO3781
Hypothetical protein; Identified by similarity to PIR:AB1999; match to protein family HMM TIGR02058.
 
     0.587
SPO3782
Hypothetical protein; Identified by similarity to PIR:AI1138; match to protein family HMM TIGR02058.
 
     0.577
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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