STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acoRAcetoin catabolism regulatory protein; Identified by similarity to SP:P28614; match to protein family HMM PF00158; match to protein family HMM PF01590. (577 aa)    
Predicted Functional Partners:
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.846
acoX
Acetoin catabolism protein X; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
   
 0.795
acoC
Acetoin dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; Identified by similarity to SP:Q59695; match to protein family HMM PF00364; match to protein family HMM PF00561.
 
  
 0.760
SPO3787
Assignment partly based on membership in sugar ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
 
    0.732
SPO1710
Assignment based partly on membership in branched-chain amino acid ABC transporter gene cluster.
 
 
    0.688
SPO3794
Hypothetical protein; Identified by similarity to GB:AAM35022.1.
 
     0.561
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
  
 0.521
SPO0585
Dehydrogenase/transketolase family protein.
     
 0.519
SPO3783
Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P10907; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
    0.511
SPO3784
Sugar ABC transporter, ATP-binding protein; Identified by similarity to SP:P02914; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
  
    0.511
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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