STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3807Hypothetical protein; Identified by similarity to GB:BAC45729.1. (116 aa)    
Predicted Functional Partners:
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
     0.757
SPO0956
Hypothetical protein; Identified by similarity to PIR:AI3454.
  
     0.746
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.723
SPO3412
Hypothetical protein; Identified by similarity to GB:AAN33763.1; match to protein family HMM TIGR02097.
 
     0.714
SPO3808
Hypothetical protein; Identified by similarity to GB:BAB48348.1.
       0.678
SPO3809
Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022.
       0.678
SPO1886
Hypothetical protein; Identified by similarity to GB:CAC46350.1; match to protein family HMM PF07345.
  
     0.675
SPO1678
Hypothetical protein; Identified by similarity to PIR:AE3305.
  
     0.663
SPO3718
Identified by match to protein family HMM PF00877.
  
     0.638
ispZ
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
 
     0.606
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.