Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3811Hypothetical protein; Identified by similarity to GB:AAK25396.1. (378 aa)    
Predicted Functional Partners:
SPO0338
Cell division permease protein FtsX, putative; Identified by match to protein family HMM PF02687.
 
 
 
 0.966
SPO3812
Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.
  
  
 0.927
ftsE
Cell division ATP-binding protein FtsE; Identified by similarity to SP:P10115; match to protein family HMM PF00005.
 
 
 
 0.922
SPO2588
N-acetylmuramoyl-L-alanine amidase, family 3; Identified by match to protein family HMM PF01520.
 
 
 0.915
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.836
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
 
     0.677
SPO2148
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.626
SPO1633
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG030; identified in over 20 other Roseobacter strains'.
 
     0.584
SPO2903
TPR/sulfotransferase domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF00685.
  
 
 0.579
SPO2738
Lipoprotein, putative.
  
   
 0.573
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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