Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO3816CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (297 aa)    
Predicted Functional Partners:
SPO3815
ABC transporter, permease protein; Identified by similarity to GB:BAB50188.1; match to protein family HMM PF00027; match to protein family HMM PF00664.
       0.773
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
    0.730
folC
folC bifunctional protein; Identified by match to protein family HMM PF01225; match to protein family HMM TIGR01499; Belongs to the folylpolyglutamate synthase family.
       0.718
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
       0.556
SPO0110
ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.
  
  
 0.539
SPO0292
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
  
 0.505
SPO3813
Hypothetical protein; Identified by Glimmer2; putative.
       0.504
SPO0081
Hypothetical protein; Identified by similarity to GB:AAM48708.1.
  
     0.492
SPO2287
Autoinducer synthesis protein; Identified by match to protein family HMM PF00765.
  
     0.489
SPO3430
Outer membrane porin; Identified by similarity to GB:CAA70599.1.
  
     0.483
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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