STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3832Identified by match to protein family HMM PF02423. (315 aa)    
Predicted Functional Partners:
SPO1567
Aminotransferase, putative.
    
  0.902
SPO3029
Serine--glyoxylate transaminase, putative; Identified by similarity to SP:O08374; match to protein family HMM PF00266.
    
  0.902
ald
Alanine dehydrogenase; Identified by similarity to SP:P30234; match to protein family HMM PF01262; match to protein family HMM PF05222; match to protein family HMM TIGR00518; PMID: 16541231; Belongs to the AlaDH/PNT family.
    
  0.901
SPO3831
Hydrolase, alpha/beta fold family; Identified by match to protein family HMM PF00561.
 
     0.832
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.812
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.773
SPO0607
Proline racemase, putative; Identified by similarity to GB:CAB71312.1; Belongs to the proline racemase family.
 
   
 0.600
SPO3829
S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde.
       0.595
sthA
Soluble pyridine nucleotide transhydrogenase; Identified by similarity to SP:P27306; match to protein family HMM PF00070; match to protein family HMM PF02852.
  
    0.512
SPO3833
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family.
       0.486
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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