STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3847ABC transporter, ATP-binding protein; Identified by similarity to GB:CAD16663.1; match to protein family HMM PF00005. (309 aa)    
Predicted Functional Partners:
SPO3706
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to GB:CAE29839.1; match to protein family HMM PF00005.
     
0.902
SPO1848
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF00005.
 
     
0.895
SPO0957
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
 0.874
SPO1937
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
 
     
0.868
SPO3641
ABC transporter, permease protein; Identified by similarity to SP:P36880.
  
 0.843
SPO2443
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
 
    
0.841
SPO3846
Hypothetical protein; Identified by similarity to GB:AAK22176.1.
 
     0.684
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.604
SPO1521
Regulatory protein, putative; Identified by similarity to SP:Q00790.
  
  
 0.550
SPO0109
Membrane protein, putative; Identified by match to protein family HMM PF01061.
 
  
 0.488
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.