Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO3850Glutathione-dependent formaldehyde dehydrogenase; Identified by similarity to SP:P45382; match to protein family HMM PF00107; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (370 aa)    
Predicted Functional Partners:
SPO3829
S-formylglutathione hydrolase, putative; Serine hydrolase involved in the detoxification of formaldehyde.
 0.999
SPO1508
Quinoprotein ethanol dehydrogenase; Identified by similarity to SP:Q9Z4J7; match to protein family HMM PF01011.
    
 0.938
SPO0097
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.919
SPO3368
Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.
  
 0.919
SPO3382
Identified by match to protein family HMM PF00171.
  
 0.919
SPO1341
Alkane-1 monooxygenase, putative; Identified by match to protein family HMM PF00487.
    
 0.905
SPO3449
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
    
 0.905
SPO2609
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
   
 
 0.811
argG
Argininosuccinate synthase; Identified by match to protein family HMM PF00764; match to protein family HMM TIGR00032; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
    
 0.710
SPO1889
Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.
 
 
 
0.622
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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