STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
SPO3852Hypothetical protein; Identified by Glimmer2; putative. (452 aa)    
Predicted Functional Partners:
SPO3853
uroporphyrinogen-III synthase, putative; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.908
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
 
   
 0.885
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.758
SPO3631
OmpA domain protein; Identified by match to protein family HMM PF00691.
  
     0.698
SPO1866
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.688
tsaD
O-sialoglycoprotein endopeptidase, putative; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.686
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.683
SPO3857
Hypothetical protein; Identified by similarity to GB:BAA34646.1; match to protein family HMM PF04543.
       0.683
SPO3872
Hypothetical protein; Identified by similarity to GB:AAM48721.1.
 
     0.676
SPO3856
YCII-related domain protein; Identified by similarity to GB:AAB60126.1; match to protein family HMM PF03795.
       0.666
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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