STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3863HD domain protein; Identified by match to protein family HMM PF01966. (197 aa)    
Predicted Functional Partners:
SPO2498
2''-deoxycytidine 5''-triphosphate deaminase-like protein.
 
   
 0.775
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.771
SPO3377
Hypothetical protein; Identified by similarity to GB:AAN30707.1.
  
     0.745
hisS
histidyl-tRNA synthetase.
  
     0.736
SPO3151
HAD-superfamily subfamily IIA hydrolase, TIGR01459; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01459; match to protein family HMM TIGR01460.
 
  
 0.736
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
 
     0.690
SPO3167
Hypothetical protein; Identified by similarity to PIR:AC3001.
  
     0.626
SPO0541
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
  
   0.618
SPO3069
Ribosomal-protein-alanine acetyltransferase, putative; Identified by similarity to SP:P09454; match to protein family HMM PF00583.
 
     0.596
SPO3807
Hypothetical protein; Identified by similarity to GB:BAC45729.1.
  
     0.559
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.