STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
regAPhotosynthetic apparatus regulatory protein RegA; Identified by similarity to SP:P42508; match to protein family HMM PF00072; match to protein family HMM TIGR01199. (184 aa)    
Predicted Functional Partners:
regB
Sensor histidine kinase RegB; Identified by similarity to GB:BAA31475.1; match to protein family HMM PF00512; match to protein family HMM PF02518.
 0.995
senC
Regulatory protein SenC; Identified by similarity to SP:Q52720; match to protein family HMM PF02630.
  
  
 0.775
SPO3864
Hypothetical protein; Identified by similarity to PIR:H84070.
       0.769
SPO0541
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.655
SPO3426
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
  
 
 0.649
SPO3870
Hypothetical protein; Identified by similarity to GB:AAM48719.1.
 
     0.545
fnrL
Transcriptional activator protein FnrL; Identified by similarity to SP:P51007; match to protein family HMM PF00027; match to protein family HMM PF00325.
     
 0.532
SPO2937
Identified by match to protein family HMM PF02630.
  
  
 0.524
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.522
SPO1678
Hypothetical protein; Identified by similarity to PIR:AE3305.
  
     0.482
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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