Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3868Hypothetical protein; Identified by similarity to GB:AAM48718.1. (500 aa)    
Predicted Functional Partners:
SPO3872
Hypothetical protein; Identified by similarity to GB:AAM48721.1.
 
     0.863
SPO0094
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.861
SPO1943
Hypothetical protein; Identified by similarity to PIR:C97571.
  
    0.824
SPO1376
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535; match to protein family HMM PF05157.
 
  
 0.815
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.798
SPO3871
Identified by match to protein family HMM PF00483.
     
 0.755
SPO3869
Putative protein TIGR00150; Identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.
       0.744
SPO3870
Hypothetical protein; Identified by similarity to GB:AAM48719.1.
       0.744
SPO3873
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
       0.744
regB
Sensor histidine kinase RegB; Identified by similarity to GB:BAA31475.1; match to protein family HMM PF00512; match to protein family HMM PF02518.
   
 
 0.741
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.