Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO3871Identified by match to protein family HMM PF00483. (228 aa)    
Predicted Functional Partners:
SPO3870
Hypothetical protein; Identified by similarity to GB:AAM48719.1.
 
 0.998
SPO3869
Putative protein TIGR00150; Identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.
    
 0.930
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
    
 0.909
SPO3872
Hypothetical protein; Identified by similarity to GB:AAM48721.1.
       0.857
SPO3873
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
 
     0.857
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
     
 0.755
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
       0.715
regB
Sensor histidine kinase RegB; Identified by similarity to GB:BAA31475.1; match to protein family HMM PF00512; match to protein family HMM PF02518.
  
   0.643
SPO3574
Hypothetical protein; Identified by similarity to GB:CAD17119.1.
  
  
 0.626
SPO0852
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408.
  
 
 0.564
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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