Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SPO3872Hypothetical protein; Identified by similarity to GB:AAM48721.1. (975 aa)    
Predicted Functional Partners:
SPO3873
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
   
 0.973
SPO3869
Putative protein TIGR00150; Identified by similarity to GB:AAK25496.1; match to protein family HMM PF02367; match to protein family HMM TIGR00150.
 
     0.884
SPO3868
Hypothetical protein; Identified by similarity to GB:AAM48718.1.
 
     0.863
SPO3870
Hypothetical protein; Identified by similarity to GB:AAM48719.1.
       0.857
SPO3871
Identified by match to protein family HMM PF00483.
       0.857
SPO2503
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.753
trx
Thioredoxin; Identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; Belongs to the thioredoxin family.
  
    0.720
SPO3851
HemY domain protein; Identified by match to protein family HMM PF07219.
  
     0.692
SPO1671
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.682
ftsQ
Cell division protein ftsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.680
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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