Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO3886Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280. (218 aa)    
Predicted Functional Partners:
SPO3884
Smr domain protein; Identified by similarity to GB:AAM48726.1; match to protein family HMM PF01713.
       0.836
SPO3885
MltA/3D domain protein; Identified by match to protein family HMM PF03562; match to protein family HMM PF06725.
       0.836
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
 
     0.783
SPO3566
Hypothetical protein; Identified by similarity to GB:CAC47907.1.
  
     0.770
SPO1907
Hypothetical protein; Identified by similarity to GB:AAK24073.1.
  
     0.704
SPO2850
DnaJ domain protein; Identified by match to protein family HMM PF00226.
  
     0.704
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.703
SPO0910
Hypothetical protein; Identified by similarity to GB:CAE29805.1.
  
     0.701
fxsA
FxsA; Identified by similarity to SP:P37147; match to protein family HMM PF04186.
       0.683
yidC
Inner membrane protein YidC, putative; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.645
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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